emodelrunner.synapses.synapse¶

Custom synapse-related classes.

Classes

`SynapseCustom`(sim, icell, synapse, section, ...)	Attach a synapse to the simulation.
`SynapseMixin`()	Class containing the synapse-related methods.

class emodelrunner.synapses.synapse.SynapseCustom(sim, icell, synapse, section, seed, rng_settings_mode, synconf_dict, start=None, interval=None, number=None, noise=None)[source]¶

Bases: SynapseMixin

Attach a synapse to the simulation.

seed¶

random number generator seed number

Type:: int

rng_settins_mode¶

mode of the random number generator Can be “Random123” or “Compatibility”

Type:: str

section¶

cell location where the synapse is attached to

Type:: neuron section

hsynapse¶

synapse instantion in simulator

Type:: neuron ProbGABAAB_EMS or ProbAMPANMDA_EMS

delay¶

synapse delay

Type:: float

weight¶

synapse weight

Type:: float

pre_mtype¶

ID (but not gid) of the presynaptic cell

Type:: int

start¶

force synapse to start firing at given value when using NetStim

Type:: int/None

interval¶

force synapse to fire at given interval when using NetStim

Type:: int/None

number¶

force synapse to fire N times when using NetStim

Type:: int/None

noise¶

force synapse to have given noise when using NetStim

Type:: int/None

class emodelrunner.synapses.synapse.SynapseMixin[source]¶

Bases: object

Class containing the synapse-related methods.

execute_synapse_configuration(synconf_dict, sid, sim, exec_all=False)[source]¶

Create a hoc file configuring synapse.

Parameters:

synconf_dict (dict) – synapse configuration
sid (int) – synapse id
sim (bluepyopt.ephys.NrnSimulator) – neuron simulator
exec_all (bool) – whether to also execute commands with ‘*’

set_random_nmb_generator(sim, icell, sid)[source]¶

Sets the random number generator.

Parameters:

sim (bluepyopt.ephys.NrnSimulator) – neuron simulator
icell (neuron cell) – cell instantiation in simulator
sid (int) – synapse id

set_tau_r(sim, icell, sid)[source]¶

Set tau_r_GABAA using random nmb generator.

Parameters:

sim (bluepyopt.ephys.NrnSimulator) – neuron simulator
icell (neuron cell) – cell instantiation in simulator
sid (int) – synapse id